When the data navigator renders the XML of an object old version it includes information about the (eventual) invalid references that have been dropped from the object - e.g.:
<img nav:objectType="img" id="obj6494" . . .>
<nav:versionCreation>
<nav:actionDesc Action="Update" Time="2011-05-19T23:24:53.137Z" LoginGuid="c1a62a83-3fe6-40a4-9c05-786251273749"
UserId="1705" UserDesc="TeraDP\MiMo" />
</nav:versionCreation>
<nav:creation>
<nav:actionDesc Action="Create" Time="2011-04-03T15:55:19.987Z" LoginGuid="7decb101-42cb-4b4d-9b0d-e4c0d988480d"
UserId="1705" UserDesc="TeraDP\MiMo" />
</nav:creation>
<nav:modified>
<nav:actionDesc Action="Update" Time="2011-05-19T23:24:04.863Z" LoginGuid="c1a62a83-3fe6-40a4-9c05-786251273749"
UserId="1705" UserDesc="TeraDP\MiMo" />
</nav:modified>
<nav:invalidRefs>
<nav:attr n="img.folderRef" ids="6815" />
</nav:invalidRefs>
. . .
</img>
is the XML of an old version of the 'img' object with id 6494 that referenced the folder with id 6915 - the reference is no longer valid (the folder has been deleted), and so it has been dropped from the object XML.