You can change the overall layout of the toolbox by editing, in the C:\tera\GN4\main\config\global\GN4\fred4_TabItems.xml, the toolbar named MainToolbox, and reimporting it in GN4 database.
You can rearrange the positions of individual tools in the toolbox.
Locate toolbox in the configuration
Toolbox is defined in FRED4_TABITEMS.XML, GN4ShellConfiguration > GN4ShellMenus > Menuset Name="Fred4Main" > ToolBarList > <l:ShellToolBar Title="Toolbox" ShortTitle="Toolbox" Name="MainToolbox".
See